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How does DNA methylation contribute to the repression of transcription?

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DNA methylation is an epigenetic mechani...

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Which of the following is NOT a defining feature of paramutation?


A) The expression pattern is transmitted to future generations.
B) The altered allele is able to convert other alleles.
C) No DNA sequence differences exist between alleles.
D) Mutation of coding sequences generates new alleles.
E) These are all defining features of paramutation.

F) A) and B)
G) A) and C)

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Which of the following stimulates the transcription of Xist on the active X chromosome?


A) Xist
B) Tsix
C) Jpx
D) Xite
E) Xist is not transcribed on the active X chromosome.

F) D) and E)
G) C) and D)

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Explain how studies in mice suggest that diet can cause epigenetic changes that are transmitted through generations.

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Studies in mice have shown that diet can...

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A group of scientists is studying memory in mice. They feed sodium butyrate, a histone deacetylase inhibitor, to a group of older mice and then subject them to memory exercises. How do you predict the memory of treated mice might compare with the memory of untreated mice?


A) Histone acetylation increases with age, so sodium butyrate may improve memory in older mice.
B) Histone acetylation increases with age, so sodium butyrate may impair memory in older mice.
C) Histone acetylation decreases with age, so sodium butyrate may improve memory in older mice.
D) Histone acetylation decreases with age, so sodium butyrate may impair memory in older mice.
E) Histone acetylation is not associated with memory in mice.

F) B) and E)
G) A) and E)

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C

A beekeeper notices that her bee population is declining rapidly. Upon further study, she notices that there are no queen bees present in her population. She suspects this is due to exposure to an environmental agent. Which of the following could be a possible mechanism for the environmental agent?


A) The environmental agent inhibits Dnmt3.
B) The environmental agent causes royal jelly to be produced in abnormally high amounts.
C) The environmental agent mimics a Dnmt3 siRNA.
D) The environmental agent is causing extensive chromosome rearrangements within the genome of the queen bees.
E) The environmental agent is a methyltransferase enzyme that acts on genes that encode queen bee characteristics.

F) D) and E)
G) A) and C)

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What effect would the deamination of 5-methylcytosine in a promoter have on the expression of that gene?


A) The gene will have increased expression because this chemical reaction will result in unmethylated cytosine.
B) The gene will have increased expression because this chemical reaction will result in thymine.
C) The gene will have increased expression because this chemical reaction will result in uracil.
D) The gene will have decreased expression because this chemical reaction will result in unmethylated cytosine.
E) The gene will have decreased expression because this chemical reaction will result in uracil.

F) B) and E)
G) None of the above

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What do you expect would develop if you injected Dnmt3 siRNA into honeybee larvae?


A) a male drone
B) a female worker
C) a female queen
D) a male drone or a female worker
E) a female worker or a queen

F) A) and B)
G) B) and E)

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How long is Xist RNA?


A) 21 bp
B) 500 bp
C) 1500 bp
D) 17,000 bp
E) 230,000 bp

F) A) and B)
G) A) and C)

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Compare the effects of the environment on the epigenetics of glucocorticoid receptor expression in mice and humans.

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The effects of the environment on the ep...

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What type of enzyme would MOST likely promote increased gene expression?


A) DNA methyltransferase
B) DNA demethylase
C) DNA polymerase
D) DNA ligase
E) DNAse

F) A) and B)
G) A) and C)

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When does paternal X inactivation occur in mice? (Select all that apply.)


A) at fertilization
B) 8-cell stage of embryo
C) blastocyst maturation
D) at birth
E) within 10 days after birth

F) A) and D)
G) D) and E)

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Consider a hypothetical gene in mice called the can gene. The mutant form of this gene causes skin cancer and behaves in a dominant manner. A mouse with skin cancer was studied to determine the location of the mutation in the can gene. However, when scientists sequenced both maternal and paternal copies of the gene, they could not identify any mutation in the gene. What is a possible explanation for the mouse's skin cancer?


A) One of the copies of the can gene could be hypermethylated and thus transcriptionally inactive in the mouse.
B) One of the copies of the can gene could have an inversion that renders it nonfunctional.
C) Both copies of the can gene must have the exact same mutation and, therefore, the sequencing reaction could not detect the location of the mutation.
D) One of the copies of the can gene could be deacetylated and thus transcriptionally inactive in the mouse.
E) The only possible explanation is that it is a different gene at a different locus that is causing the skin cancer in the mouse.

F) C) and E)
G) B) and D)

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Kit+Kit+ mice were crossed with Kit+Kitt mice. The embryos resulting from this cross were then injected with miRNAs specific to Kit mRNA. What phenotype will these embryos develop to have?


A) All mice will have the wild-type phenotype.
B) All mice will have the mutant phenotype.
C) The Kit+Kit+ mice will have the wild-type phenotype, and the Kit+Kitt mice will have the mutant phenotype.
D) The Kit+Kit+ mice will have more mutant phenotypes than wild-type phenotypes, and the Kit+Kitt mice will have the mutant phenotype.
E) The Kit+Kit+ mice will have the wild-type phenotype, and the Kit+Kitt mice will have a 1:1 ratio of the wild-type to mutant phenotype.

F) B) and E)
G) A) and D)

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Which of the following is NOT affected by genomic imprinting?


A) Angelman syndrome
B) Prader-Willi syndrome
C) Beckwith-Wiedemann syndrome
D) Igf2 alleles in mice
E) Down syndrome

F) A) and B)
G) A) and C)

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Describe three important features that define paramutation.

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Paramutation is a phenomenon in genetics that involves the transfer of epigenetic information from one allele to another, resulting in heritable changes in gene expression. Three important features that define paramutation include: 1. Heritability: Paramutation results in heritable changes in gene expression that can be passed on to future generations. This is a key feature that distinguishes paramutation from other forms of gene regulation. 2. Epigenetic regulation: Paramutation involves the transfer of epigenetic information, such as DNA methylation or histone modifications, from one allele to another. This epigenetic modification leads to stable changes in gene expression without altering the DNA sequence itself. 3. Allelic interaction: Paramutation occurs through interactions between two different alleles of the same gene. One allele, known as the paramutagenic allele, induces heritable changes in the expression of the other allele, known as the paramutable allele. This interaction between alleles is essential for the establishment and maintenance of paramutation. These three features collectively define paramutation as a unique and heritable form of gene regulation that involves epigenetic modifications and allelic interactions. Understanding paramutation is important for unraveling the complexities of gene regulation and inheritance in genetics.

Which of the following statements is NOT true of DNA methylation?


A) It is associated with transcription repression.
B) It occurs on cytosines adjacent to guanines.
C) Cytosines on both strands are usually methylated.
D) It is carried out by DNA methyltransferases.
E) Methylation is permanent and cannot be reversed.

F) C) and D)
G) A) and B)

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Which of the following stimulates the transcription of Xist on the inactive X chromosome?


A) Xist
B) Tsix
C) Jpx
D) Xite
E) Xist is not transcribed on the inactive X chromosome.

F) A) and B)
G) C) and D)

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Which statement BEST described how imprinting varies over the course of development?


A) Imprinted alleles are permanently silenced from embryo development through adulthood.
B) Imprinting is only active during embryo development, but expression returns to normal during adulthood.
C) Imprinting is only active during gametogenesis, where alleles are selectively silenced before being transmitted to offspring.
D) Imprinting randomly flickers on and off during development.
E) Imprinted alleles differ by tissue type and time of development.

F) B) and D)
G) None of the above

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E

List three types of molecular mechanisms that alter chromatin structure and underlie many epigenetic phenotypes.

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Three types of molecular mechanisms that...

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